OBO Foundry dashboard analysis¶

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/tmp/ipykernel_7583/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    38
Turtle            36
unknown            8
OWL/XML Syntax     2
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 76 2703.750000 10825.110247 0.0 101.50 350.5 1842.75 96738.0
Declaration 76 636.845238 1358.076630 0.0 51.75 265.0 624.75 11135.0
SubClassOf 72 740.500000 2659.331932 0.0 14.00 153.0 599.00 23882.0
ObjectPropertyRange 66 36.619048 63.949322 0.0 5.50 22.5 42.50 520.0
ObjectPropertyDomain 65 34.142857 63.207279 0.0 3.50 19.5 41.75 517.0
DataPropertyRange 58 11.607143 24.183544 0.0 0.00 4.0 10.00 170.0
InverseObjectProperties 55 10.095238 20.061123 0.0 0.00 2.5 9.00 126.0
SubObjectPropertyOf 55 44.904762 91.589001 0.0 0.00 11.0 61.50 709.0
DataPropertyDomain 50 13.083333 35.518944 0.0 0.00 2.0 6.25 235.0
DisjointClasses 49 164.916667 1338.832104 0.0 0.00 1.0 13.50 12277.0
ClassAssertion 47 104.904762 414.501722 0.0 0.00 1.0 20.00 3053.0
SubAnnotationPropertyOf 41 6.607143 12.238610 0.0 0.00 0.0 10.00 85.0
EquivalentClasses 41 106.273810 671.352373 0.0 0.00 0.0 27.50 6147.0
SubDataPropertyOf 36 7.726190 27.847844 0.0 0.00 0.0 5.25 242.0
TransitiveObjectProperty 34 3.238095 6.679620 0.0 0.00 0.0 5.00 38.0
AnnotationPropertyRangeOf 31 2.964286 6.133940 0.0 0.00 0.0 2.00 30.0
FunctionalObjectProperty 26 1.773810 3.674566 0.0 0.00 0.0 2.00 18.0
SymmetricObjectProperty 26 2.297619 4.991028 0.0 0.00 0.0 1.25 32.0
FunctionalDataProperty 25 1.607143 4.363092 0.0 0.00 0.0 2.00 26.0
InverseFunctionalObjectProperty 24 0.988095 2.310239 0.0 0.00 0.0 1.00 12.0
IrrefexiveObjectProperty 22 2.964286 6.804404 0.0 0.00 0.0 1.00 35.0
AsymmetricObjectProperty 18 2.107143 5.185749 0.0 0.00 0.0 0.00 22.0
ObjectPropertyAssertion 17 148.500000 916.809324 0.0 0.00 0.0 0.00 8133.0
DisjointUnion 17 7.166667 21.219355 0.0 0.00 0.0 0.00 116.0
SubPropertyChainOf 15 3.107143 14.851082 0.0 0.00 0.0 0.00 120.0
DataPropertyAssertion 14 82.285714 440.736612 0.0 0.00 0.0 0.00 3617.0
EquivalentObjectProperties 9 0.845238 4.143493 0.0 0.00 0.0 0.00 36.0
AnnotationPropertyDomain 9 0.238095 0.913342 0.0 0.00 0.0 0.00 6.0
DisjointObjectProperties 9 0.654762 2.538826 0.0 0.00 0.0 0.00 17.0
Rule 8 0.952381 3.636842 0.0 0.00 0.0 0.00 25.0
DifferentIndividuals 7 0.476190 2.817656 0.0 0.00 0.0 0.00 25.0
ReflexiveObjectProperty 4 0.059524 0.284168 0.0 0.00 0.0 0.00 2.0
SameIndividual 3 1.690476 12.997661 0.0 0.00 0.0 0.00 118.0
EquivalentDataProperties 1 0.059524 0.545545 0.0 0.00 0.0 0.00 5.0
NegativeObjectPropertyAssertion 1 0.011905 0.109109 0.0 0.00 0.0 0.00 1.0
DatatypeDefinition 1 0.011905 0.109109 0.0 0.00 0.0 0.00 1.0
DisjointDataProperties 1 0.023810 0.218218 0.0 0.00 0.0 0.00 2.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 76 2820.761905 9313.420826 0.0 110.5 783.5 2110.25 78469.0
ObjectUnionOf 50 12.511905 20.597984 0.0 0.0 2.0 14.50 88.0
ObjectAllValuesFrom 45 16.345238 30.453399 0.0 0.0 1.5 18.00 162.0
ObjectSomeValuesFrom 44 284.452381 1818.230408 0.0 0.0 1.0 75.75 16614.0
ObjectIntersectionOf 38 98.321429 679.900403 0.0 0.0 0.0 15.00 6217.0
ObjectExactCardinality 32 3.654762 9.651136 0.0 0.0 0.0 3.00 66.0
DataExactCardinality 28 2.285714 4.325802 0.0 0.0 0.0 3.00 18.0
ObjectComplementOf 22 3.595238 19.910111 0.0 0.0 0.0 1.00 179.0
DataSomeValuesFrom 18 1.416667 4.470003 0.0 0.0 0.0 0.00 33.0
ObjectMinCardinality 18 1.083333 3.050611 0.0 0.0 0.0 0.00 17.0
DataAllValuesFrom 17 0.678571 1.636634 0.0 0.0 0.0 0.00 9.0
ObjectHasValue 17 5.166667 27.734470 0.0 0.0 0.0 0.00 211.0
DataHasValue 16 21.178571 67.311210 0.0 0.0 0.0 0.00 494.0
ObjectMaxCardinality 12 11.273810 97.538914 0.0 0.0 0.0 0.00 894.0
ObjectOneOf 9 3.654762 29.669868 0.0 0.0 0.0 0.00 272.0
DataMinCardinality 7 0.226190 1.434104 0.0 0.0 0.0 0.00 13.0
DataMaxCardinality 6 1.190476 6.825671 0.0 0.0 0.0 0.00 59.0
ObjectHasSelf 1 0.011905 0.109109 0.0 0.0 0.0 0.00 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
42 OBO 0.322 0.549 0.095
57 PROVO 0.318 0.504 0.131
25 FOAF 0.303 0.333 0.274
27 IAO 0.296 0.593 0.000
43 OEO 0.285 0.571 0.000
6 CHAMEO 0.275 0.549 0.000
15 EMMO 0.275 0.549 0.000
20 EMMO_crystallography 0.275 0.549 0.000
59 QUDT 0.275 0.549 0.000
77 nfdicore 0.275 0.549 0.000
54 PMDCO 0.275 0.549 0.000
22 EMMO_mechanical_testing 0.264 0.527 0.000
21 EMMO_mappings 0.252 0.504 0.000
19 EMMO_atomistic 0.252 0.504 0.000
62 SEMMD 0.252 0.504 0.000
2 BWMD-DOMAIN 0.252 0.504 0.000
18 EMMO_Datamodel 0.252 0.504 0.000
3 BWMD-MID 0.252 0.504 0.000
4 CCO 0.252 0.504 0.000
47 OIEmodels 0.241 0.482 0.000
61 SAREF 0.241 0.482 0.000
71 m4i 0.241 0.482 0.000
45 OIEmanufacturing 0.241 0.482 0.000
46 OIEmaterials 0.241 0.482 0.000
30 MAMBO 0.234 0.467 0.000
39 NPO 0.234 0.467 0.000
12 DEB 0.234 0.467 0.000
31 MDO 0.234 0.467 0.000
64 SO 0.234 0.467 0.000
0 AMONTOLOGY 0.234 0.467 0.000
65 SP 0.234 0.467 0.000
23 EMMO_microstructure 0.234 0.467 0.000
67 UO 0.234 0.467 0.000
13 DISO 0.222 0.444 0.000
75 mvc 0.222 0.444 0.000
72 mat 0.222 0.444 0.000
35 MSEO 0.222 0.444 0.000
38 MaterialsMine 0.222 0.444 0.000
37 MatOnto 0.222 0.444 0.000
26 GPO 0.222 0.444 0.000
41 OA 0.222 0.444 0.000
34 MOL_TENSILE 0.219 0.438 0.000
29 LPBFO 0.219 0.438 0.000
82 tribAIn 0.219 0.438 0.000
28 LDO 0.200 0.400 0.000
5 CDCO 0.200 0.400 0.000
14 DSIM 0.200 0.400 0.000
24 EXPO 0.200 0.400 0.000
79 opmw 0.200 0.400 0.000
10 CMSO 0.200 0.400 0.000
1 ASMO 0.200 0.400 0.000
68 WILD 0.200 0.400 0.000
80 periodictable 0.200 0.400 0.000
7 CHEMINF 0.200 0.400 0.000
55 PODO 0.200 0.400 0.000
51 P-Plan 0.200 0.400 0.000
53 PLDO 0.200 0.400 0.000
76 mwo 0.200 0.400 0.000
56 PRIMA 0.189 0.378 0.000
33 MOL_BRINELL 0.189 0.378 0.000
81 ssos 0.189 0.378 0.000
36 MSLE 0.189 0.378 0.000
63 SKOS_MDO 0.189 0.378 0.000
66 SSN 0.189 0.378 0.000
32 MDS 0.189 0.378 0.000
69 bmo 0.189 0.378 0.000
50 OSMO 0.189 0.378 0.000
44 OIEcharacterisation-methods 0.189 0.378 0.000
48 OIEsoftware 0.189 0.378 0.000
11 CSO 0.167 0.333 0.000
73 matinfo 0.167 0.333 0.000
60 QUDV 0.167 0.333 0.000
78 ontorule 0.155 0.311 0.000
9 CIF-core 0.000 0.000 0.000
49 OM 0.000 0.000 0.000
74 metal-alloy 0.000 0.000 0.000
17 EMMO_BattINFO 0.000 0.000 0.000
83 vimmp 0.000 0.000 0.000
58 Photovoltaics 0.000 0.000 0.000
8 CHMO 0.000 0.000 0.048
70 enanomapper 0.000 0.000 0.000
52 PATO 0.000 0.000 0.107
16 EMMO_BVC 0.000 0.000 0.000
40 NanoMine 0.000 0.000 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 84.0 0.196202 0.083724 0.0 0.189 0.219 0.241 0.322
score_dash 84.0 0.386262 0.162575 0.0 0.378 0.438 0.482 0.593
score_impact 84.0 0.007798 0.036389 0.0 0.000 0.000 0.000 0.274

OBO dependency graph